REBASE::M.Pno11628I has 481 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.4e-11 28.7 0.1 2.9e-10 26.3 0.1 2.0 1 REBASE::M.Pno11628I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Pno11628I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.3 0.1 2.9e-10 2.9e-10 16 137 .. 167 280 .. 164 333 .. 0.82
Alignments for each domain:
== domain 1 score: 26.3 bits; conditional E-value: 2.9e-10
UPF0020 16 LAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelk..lygsDldrrvvqgareNaekagvgd 103
+ a +v + + + ge++lDP CG+G++l ++ + + ++r+ + l++++l++ + +N gv+d
REBASE::M.Pno11628I 167 ITAFMVGRINPQLGETILDPSCGTGGFLTCSIRHMRRFV-------------KTPDDERTL-QagLRAVELKQLPHMLCVTNMLLHGVED 242
6677999999*****************953333333333.............233444433.336********99999***********9 PP
UPF0020 104 liefsqadaakLr....lkegevdvivtnpPYGerlgs 137
+ +a + + +++evdvi++npP+G +++
REBASE::M.Pno11628I 243 PGFVIHGNALARPyesyTRRDEVDVILSNPPFGGQIEE 280
999999888877677887888************99987 PP
Or compare REBASE::M.Pno11628I to CDD or PaperBLAST