REBASE::M.Pps5344II has 471 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.7e-12 32.1 0.0 1.2e-11 30.8 0.0 1.6 1 REBASE::M.Pps5344II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Pps5344II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.8 0.0 1.2e-11 1.2e-11 18 175 .. 153 304 .. 149 316 .. 0.77
Alignments for each domain:
== domain 1 score: 30.8 bits; conditional E-value: 1.2e-11
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelk.lygsDldrrvvqgareNaekagvgdlie 106
++++l + + ge+++DP G+G++lI a +++ + e++ + + + g+++ + + + Na +++
REBASE::M.Pps5344II 153 DCMIKLLQPRLGEVIQDPATGTGGFLISADHYVRSQVS--------------EKKYKSNPPrYEGVEIEKGTYRICLMNAFLHRLESHLI 228
699*************************9999988882..............333332222377*************************9 PP
UPF0020 107 fsqadaakLrlkegevdvivtnpPYGerlgskkal..ekLYs......eflrelkrvlrgggrlvlltaenkaleka 175
+ +a ++ + + + dvi++npP+G + gs+++ + Y +fl+ + l+ ggr+++++++n +e+
REBASE::M.Pps5344II 229 LGDALTKDAE-DLSPADVILANPPFGSKAGSARKQrdDIAYAttnkqlAFLQHIYLGLKPGGRAAVVLPDNALFEDG 304
9999999988.55599***************9987533345422222235555555677778888888888777765 PP
Or compare REBASE::M.Pps5344II to CDD or PaperBLAST