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Align REBASE::M.Pps5344II to PF01170 (UPF0020)

REBASE::M.Pps5344II has 471 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    7.4e-12   31.5   0.0      2e-11   30.1   0.0    1.7  1  REBASE::M.Pps5344II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Pps5344II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0     2e-11     2e-11      18     174 ..     153     303 ..     149     316 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2e-11
                          HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--.EEEEES-HHHHHHHHHHHHHTT-GGGEE CS
              UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelk.lygsDldrrvvqgareNaekagvgdlie 106
                           ++++l + + ge+++DP  G+G++lI a   +++ +               e++ + + +   g+++++   + +  Na   +++    
  REBASE::M.Pps5344II 153 DCMIKLLQPRLGEVIQDPATGTGGFLISADHYVRSQVS--------------EKKYKSNPPrYEGVEIEKGTYRICLMNAFLHRLESHLI 228
                          699*************************9999888882..............333332222477************************99 PP

                          EEE--GGG--STTS---EEEE----------HHHH..HHHHH......HHHHHHHHH-TT..-EEEEEESSHHHHH CS
              UPF0020 107 fsqadaakLrlkegevdvivtnpPYGerlgskkal..ekLYs......eflrelkrvlrgggrlvlltsenkalek 174
                          + +a  ++ + + +  dvi++npP+G + gs+++   +  Y       +fl+ +   l+ ggr+++++++n  +e+
  REBASE::M.Pps5344II 229 LGDALTKDAE-DLSPADVILANPPFGSKAGSARKQrdDIAYAttnkqlAFLQHIYLGLKPGGRAAVVLPDNALFED 303
                          9999999888.55599***************998752334541222223555555566777788888777777776 PP



Or compare REBASE::M.Pps5344II to CDD or PaperBLAST