REBASE::M.PpuAA7I has 552 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.4e-10 25.4 0.0 9.9e-10 24.5 0.0 1.4 1 REBASE::M.PpuAA7I
Domain annotation for each sequence (and alignments):
>> REBASE::M.PpuAA7I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.5 0.0 9.9e-10 9.9e-10 20 174 .. 198 357 .. 193 373 .. 0.76
Alignments for each domain:
== domain 1 score: 24.5 bits; conditional E-value: 9.9e-10
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqad 111
++r + ++ge+++DP G+ ++lI a ++ + y+ ++e ++++++ ++g++l + + a N g+++ e ++
REBASE::M.PpuAA7I 198 IIRCIKPQPGETIQDPAAGTAGFLIAADAYIKSQT-----DDHYN-LDEKARSFQRNRAFVGVELVPGTRRLALMNTLLHGMEGDEEGVVHL 283
56677899*****************8855544444.....23333.4444445556666***********************9999988888 PP
UPF0020 112 aakLr...lkeg.evdvivtnpPYGerlgskkal.ekLYs.......eflrelkrvlrgggrlvlltaenkalek 174
+L ++ +vdvi++npP+G + g + ++L+ +fl+ + r l+ ggr+++++++n +e+
REBASE::M.PpuAA7I 284 GNALGqtgAN-LpKVDVILSNPPFGTAKGGGGPTrDDLTYrtsnkqlAFLQHIYRGLKPGGRAAVVLPDNVLFEA 357
7778754433.259***********99887766557774313333336888889999999999999999988876 PP
Or compare REBASE::M.PpuAA7I to CDD or PaperBLAST