REBASE::M.PreB001II has 490 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.9e-14 38.6 0.0 9.6e-14 37.6 0.0 1.5 1 REBASE::M.PreB001II
Domain annotation for each sequence (and alignments):
>> REBASE::M.PreB001II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.6 0.0 9.6e-14 9.6e-14 18 134 .. 172 279 .. 168 340 .. 0.76
Alignments for each domain:
== domain 1 score: 37.6 bits; conditional E-value: 9.6e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
+ +v++ + + ge+++DP CG+G++l a +++ + ++ e ++ +++++g+++++ + +N g++ +++
REBASE::M.PreB001II 172 RFMVNRIDPRLGESIMDPACGTGGFLACAFDHVKEHY-----------VKTTEDHKTLQQQIFGVEKKQLPHLLCTTNMLLHGIEVPVQI 250
679***********************55544444444...........2344555557777*******9999999999999999999998 PP
UPF0020 108 sqada..akLrlkegevdvivtnpPYGer 134
+ + + L + ++++dvi+tnpP+G
REBASE::M.PreB001II 251 RHDNTlnKPLSAWDEQFDVIITNPPFGGT 279
8866511556678889***********54 PP
Or compare REBASE::M.PreB001II to CDD or PaperBLAST