REBASE::M.Psc361BI has 473 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.2e-14 38.5 0.0 1.2e-13 37.3 0.0 1.5 1 REBASE::M.Psc361BI
Domain annotation for each sequence (and alignments):
>> REBASE::M.Psc361BI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.3 0.0 1.2e-13 1.2e-13 18 179 .. 160 319 .. 156 335 .. 0.77
Alignments for each domain:
== domain 1 score: 37.3 bits; conditional E-value: 1.2e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefs 108
a++ + k ge+ DP CG+G++l+ a + +++ + ++ ++ l g+D+ + vv+ a N+ g+g +
REBASE::M.Psc361BI 160 QAMIDCLQPKIGETVCDPACGTGGFLLAAYDYMKGQS-----------QDKDKLDFLNNKALHGVDNTPLVVTLASMNLYLHGIGTDRSPI 239
6899999999***************985543333332...........45556666677889**********************9765544 PP
UPF0020 109 qadaakLr.lkegevdvivtnpPYGerlgskkal..ekLYse.......flrelkrvlrgggrlvlltaenkalekaleer 179
+ + +L+ ++e v+vi++npP+Ger+ ++ ++Y e fl+ + +l++ggr++++++++ +++ ++e
REBASE::M.Psc361BI 240 ACED-SLEkEPEMLVNVILANPPFGERTAGSVDInrPDFYVEtknnqlnFLQHMMLMLKTGGRAAVVIPDDILFKDGAHEI 319
4333.355468889*************9887777466899753334444889999999999*******9999999877765 PP
Or compare REBASE::M.Psc361BI to CDD or PaperBLAST