REBASE::M.Psp2401II has 509 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.8e-16 44.1 0.0 3e-15 42.5 0.0 1.7 2 REBASE::M.Psp2401II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Psp2401II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.0 0.0 0.13 0.13 168 193 .. 33 58 .. 8 60 .. 0.79
2 ! 42.5 0.0 3e-15 3e-15 16 172 .. 173 349 .. 168 369 .. 0.81
Alignments for each domain:
== domain 1 score: -2.0 bits; conditional E-value: 0.13
UPF0020 168 enkalekaleeralrkvkeknvklgl 193
++ + k+lee++ ++ +++n+++ +
REBASE::M.Psp2401II 33 SYLLFLKMLEEMDHEQQEARNGNYRT 58
55678999999999**9999999865 PP
== domain 2 score: 42.5 bits; conditional E-value: 3e-15
UPF0020 16 LAaalvrlagwkdgepllDPmCGsGtilIEa..allganiapgllrefvye...........lkaeaeeearaelklygsDldrrvvqga 92
L ++l ++a+ k g + DP CGsG++lI a +l n p ++ e+v+ ++++a+ ++ ++ +yg+D d+ +++ a
REBASE::M.Psp2401II 173 LIRVLTQMADPKIGGTVCDPACGSGGFLIAAyeHMLLVNTSPEFVHEKVSPdggvrkigigdKLSRAQWDFLQTGAFYGFDGDQDILRMA 262
568899***********************66333556666667776776669*******99999999999999999************** PP
UPF0020 93 reNaekagvgdliefsqadaakLr..lkegevdvivtnpPY.Gerlgskkal....ekLYseflrelkrvlrgggrlvlltaenkal 172
Na g + ++ ++ + +e ++d i+ npP+ G r ++k++l + Y fl + r lr gg + +++++ +
REBASE::M.Psp2401II 263 AMNAMLHGFDRCPMVQRDSICGGEdkWDEIQFDYILENPPFsGSRGDAKRSLriekGDKYVLFLAHALRSLRPGGTAGIIFPNGILF 349
***********99999999999987555669**********5555555555432113458889999999999988888888776665 PP
Or compare REBASE::M.Psp2401II to CDD or PaperBLAST