REBASE::M.Psp81I has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-11 30.1 0.0 3.7e-11 29.2 0.0 1.4 1 REBASE::M.Psp81I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Psp81I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.2 0.0 3.7e-11 3.7e-11 20 145 .. 176 293 .. 170 352 .. 0.74
Alignments for each domain:
== domain 1 score: 29.2 bits; conditional E-value: 3.7e-11
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl.iefsqad 111
+vrl +++++++DP CG+ ++l+ a ++ + + + ++ e + g D dr +++ + N+ +++ i++++
REBASE::M.Psp81I 176 MVRLLAPTPNDKIVDPACGTAGFLVSSAEYIREKYEAEM--------TSVQWEHFSGEMFSGYDTDRTMLRLSAMNLMLHSISQPhIDYVDSV 260
99999***********************99999994333........2333333355559******************999987537887766 PP
UPF0020 112 aakLrlkegevdvivtnpPYGerlgskkalekLY 145
++ + + +d++++npP+ ++++ +++L
REBASE::M.Psp81I 261 SRQNN-VASAYDIVLANPPFTGTVDAESINDNLR 293
66555.5568**********99999988887774 PP
Or compare REBASE::M.Psp81I to CDD or PaperBLAST