REBASE::M.PspE228III has 754 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-16 46.3 0.0 9.1e-16 44.2 0.0 2.0 1 REBASE::M.PspE228III
Domain annotation for each sequence (and alignments):
>> REBASE::M.PspE228III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.2 0.0 9.1e-16 9.1e-16 16 138 .. 314 475 .. 311 492 .. 0.81
Alignments for each domain:
== domain 1 score: 44.2 bits; conditional E-value: 9.1e-16
UPF0020 16 LAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye....................................lkae 68
+ +v + + ++ge + DP CGsG++lI a +++ + l +++ e
REBASE::M.PspE228III 314 IVEFMVSVLDPQEGEYICDPCCGSGGFLIRAFEYVREQIESELEQRKEEvkkqlipenyddlkpkeqeaidakvsdafakmnfevD--- 399
556799999**********************999999998887777776889************************9966544332... PP
UPF0020 69 aeeear......aelk...lygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgsk 138
+ + l+ +yg D ++r+ ++a+ N g g+ +++ eg +dvi+tnpP+G r+++
REBASE::M.PspE228III 400 ----VNnakgrlRSLSfdcIYGTDANPRMARTAKMNMIMHGDGHGGVHHHDGLLNVNgIWEGRFDVILTNPPFGARVDKD 475
....333344443333579*****************998887766555554556666667999*************9876 PP
Or compare REBASE::M.PspE228III to CDD or PaperBLAST