REBASE::M.PspR2A2I has 488 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5e-12 32.0 0.0 1.2e-11 30.8 0.0 1.5 1 REBASE::M.PspR2A2I
Domain annotation for each sequence (and alignments):
>> REBASE::M.PspR2A2I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.8 0.0 1.2e-11 1.2e-11 20 132 .. 174 279 .. 170 289 .. 0.78
Alignments for each domain:
== domain 1 score: 30.8 bits; conditional E-value: 1.2e-11
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldr..rvvqgareNaekagvgdliefs 108
+vr+ + k +e+ +DP CG+G++l ++++ ++ ++ae e ++++yg+++++ ++++++ ++ +v ++i
REBASE::M.PspR2A2I 174 MVRMVDPKLDEKVMDPACGTGGFLT--CTIEHKRSR---------YVKTAEDERTLQASIYGVEKKPlpHLLATTNMILHGIEVPNQIRHD 253
9***********************5..777777662.........23456666667888******97224555555556666677777777 PP
UPF0020 109 qadaakLr..lkegevdvivtnpPYG 132
+ a+ L +++ vd iv+npP+G
REBASE::M.PspR2A2I 254 NTLARPLIswGPKERVDCIVANPPFG 279
888888888878889**********9 PP
Or compare REBASE::M.PspR2A2I to CDD or PaperBLAST