REBASE::M.Pst87II has 490 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.9e-14 38.9 0.0 7.6e-14 38.0 0.0 1.5 1 REBASE::M.Pst87II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Pst87II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.0 0.0 7.6e-14 7.6e-14 18 134 .. 172 279 .. 168 340 .. 0.76
Alignments for each domain:
== domain 1 score: 38.0 bits; conditional E-value: 7.6e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsq 109
+ +v++ + k ge+++DP CG+G++l + ++ ++ e ++ +++++g+++++ + +N g++ ++++
REBASE::M.Pst87II 172 RFMVNRIDPKLGESIMDPACGTGGFLA--CAFDHVKVH---------YVNTTEDHKTLQQQIFGVEKKQLPHLLCTTNMLLHGIEVPVQIRH 252
679**********************93..333333332.........34566666668888*******999999999999999999999888 PP
UPF0020 110 ada..akLrlkegevdvivtnpPYGer 134
+ + L + ++++dvi+tnpP+G
REBASE::M.Pst87II 253 DNTlnKPLSAWDEQFDVIITNPPFGGT 279
66511556678889***********54 PP
Or compare REBASE::M.Pst87II to CDD or PaperBLAST