REBASE::M.PstRCH2I has 554 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.6e-17 48.8 0.0 6.1e-17 48.1 0.0 1.3 1 REBASE::M.PstRCH2I
Domain annotation for each sequence (and alignments):
>> REBASE::M.PstRCH2I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 48.1 0.0 6.1e-17 6.1e-17 20 166 .. 201 366 .. 196 392 .. 0.78
Alignments for each domain:
== domain 1 score: 48.1 bits; conditional E-value: 6.1e-17
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeearaelk..lygsDldrrvvqgareNa 96
+ +l + + g++++DP CG+G++l+ a + + +++ + + + a + e+a+a l+ lyg D+d+ +v+ + N+
REBASE::M.PstRCH2I 201 MAELVQPQLGHKIADPACGTGGFLLGAYQYIVTQLAIKAGAK--NlapdedgfvrtsVAAALTEKAQAILQesLYGYDIDATMVRLGLMNL 289
677888999*****************9988777775555444..2458999*987776666666666665577****************** PP
UPF0020 97 ekagvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYse.......flrelkrvlrgggrlvllt 166
g+++ i++++ ++ +e+e+d++++npP+ ++++ +e+L + f + + r l++gg +++++
REBASE::M.PstRCH2I 290 MMHGIDEpHIDYQDTLSKSYD-EEAEYDIVLANPPFTGSIDKGDINENLQLSttktellFVENIYRLLKKGGTACVIV 366
*****9835999999999999.888*****************999999865411122224455566666666666665 PP
Or compare REBASE::M.PstRCH2I to CDD or PaperBLAST