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Align REBASE::M.Rba9517I to PF01170 (UPF0020)

REBASE::M.Rba9517I has 576 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    8.8e-13   34.5   0.0    2.3e-12   33.2   0.0    1.7  1  REBASE::M.Rba9517I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Rba9517I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   2.3e-12   2.3e-12      17     179 ..     175     381 ..     170     393 .. 0.65

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 2.3e-12
                         HHHHHHHTT--TTS-EEETT-TTSHHHHHHH..HHHTT--TTTT----SS............................HHHHHHHHHH... CS
             UPF0020  17 AaalvrlagwkpgepllDPmCGsGtilIEaa..llganiapgllrefvle............................lkaeaeeear... 74 
                          a +v + + + g++++DP CG+G++lI a   +l+++  p l++e  +                                          
  REBASE::M.Rba9517I 175 RAMMVAMVDPDLGDTIFDPACGTGGFLIDAVehVLARYSSPELVKEAPIYgetwlenkgwtleeakrqipnlqtykrgP--------Adri 257
                         5789**************************7335666666777766655589********9999998888655543332........2233 PP

                         .......HH--..EEEEES-HHHHHHHHHHHHHTT-G.....GGEEEEE--GGG--..STTS---EEEE----------HHHHHHHHHH.. CS
             UPF0020  75 .......aelk..lygsDldrrvvqgareNaekagvg.....dliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYse.. 147
                                   +  +yg+D  r++++ a  N    g+         ++s+     L+    +  ++vi++npP+   l +    ++L  +  
  REBASE::M.Rba9517I 258 ptggwemL--ErsVYGFDVSRQMMRIAMMNMVLHGLRnanikRANTLSE--TGGLTdeDLKRRYRVILSNPPFAGVLPKDSIRKDLPTKsk 344
                         34555334..355*****************7665554000004444433..334555545568**********866655554455433212 PP

                         .....HHHHHHHH-TT..-EEEEEESSHHHHHCC--- CS
             UPF0020 148 .....flrelkrvlrgggrlvlltsenkalekaleer 179
                              fl  + + l+ ggr +++++e   + +  ++r
  REBASE::M.Rba9517I 345 ksellFLGVMMQALAPGGRCAVVLPEGVLFGSTSAHR 381
                         2222256666666666666666666666666555555 PP



Or compare REBASE::M.Rba9517I to CDD or PaperBLAST