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Align REBASE::M.RbaNRL2II to PF01170 (UPF0020)

REBASE::M.RbaNRL2II has 512 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    2.5e-12   33.0   0.3    7.8e-11   28.2   0.3    2.5  1  REBASE::M.RbaNRL2II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.RbaNRL2II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.3   7.8e-11   7.8e-11      15      54 ..     196     235 ..     194     309 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 7.8e-11
                          HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT-- CS
              UPF0020  15 tLAaalvrlagwkpgepllDPmCGsGtilIEaallgania 54 
                          ++A++l r+a  +pg+++ DP CGsG++lI aa  + ++ 
  REBASE::M.RbaNRL2II 196 QVARVLARIAAPQPGDRICDPACGSGSLLIKAAEEVGSRD 235
                          579*****************************98765554 PP



Or compare REBASE::M.RbaNRL2II to CDD or PaperBLAST