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Align REBASE::M.Rgi145I to PF01170 (UPF0020)

REBASE::M.Rgi145I has 487 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    2.3e-13   36.4   0.0    8.2e-13   34.6   0.0    1.9  1  REBASE::M.Rgi145I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Rgi145I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   8.2e-13   8.2e-13      19     178 ..     162     324 ..     158     335 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 8.2e-13
                        HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE- CS
            UPF0020  19 alvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqa 110
                        +++ l + +pge+++DP  G+G++l+     +++          l  ++ea + ++++  + g++l +   + +  N+   g+++++ + + 
  REBASE::M.Rgi145I 162 SIIHLVKPQPGEVIQDPAAGTGGFLVACDHYVKQQTD------DLYSLSEADRTFQRQDAFTGLELVHDTHRLCLMNLMLHGIEGRVRMGDT 247
                        57788999*****************965555555553......33478899999999999*******************************9 PP

                        -GGG--STTS---EEEE----------HHHH.HHHHH.........HHHHHHHHH-TT..-EEEEEESSHHHHHCC-- CS
            UPF0020 111 daakLrlkegevdvivtnpPYGerlgskkal.ekLYs.........eflrelkrvlrgggrlvlltsenkalekalee 178
                           + ++ +   d+ivtnpP+G + g ++ +  ++ +         +f + + r+l+ ggr+++++++n  +e+  ++
  REBASE::M.Rgi145I 248 LSSDGEALS-RADLIVTNPPFGTKRGGERPNrASFVEtrgssnkqlAFVEHVYRNLAPGGRAAVVVPDNVLFEDNTGR 324
                        999988444.79**********87776666624554422222222246666667777888888888888877776655 PP



Or compare REBASE::M.Rgi145I to CDD or PaperBLAST