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Align REBASE::M.Ror24724II to PF01170 (UPF0020)

REBASE::M.Ror24724II has 489 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    2.8e-13   36.1   0.0    5.6e-13   35.1   0.0    1.5  1  REBASE::M.Ror24724II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Ror24724II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   5.6e-13   5.6e-13      18     135 ..     172     280 ..     168     344 .. 0.71

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 5.6e-13
                           HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEE CS
               UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106
                           + +v + + k ge+++DP CG+G++l  a   ++n +            +++  ++  ++++ g+++++     a +N    g++  ++
  REBASE::M.Ror24724II 172 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNNY-----------VQNVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQ 249
                           67999*********************77766666666...........3455555667788*******998889999999999988888 PP

                           EEE--G..GG--STTS---EEEE-------- CS
               UPF0020 107 fsqada..akLrlkegevdvivtnpPYGerl 135
                           ++  +   + L   +++ dvivtnpP+G   
  REBASE::M.Ror24724II 250 IRHDNTlnKPLSSWDEQLDVIVTNPPFGGTE 280
                           88766511556677779***********643 PP



Or compare REBASE::M.Ror24724II to CDD or PaperBLAST