REBASE::M.Rsp34AII has 468 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-11 30.4 0.0 6.3e-11 28.4 0.0 2.0 1 REBASE::M.Rsp34AII
Domain annotation for each sequence (and alignments):
>> REBASE::M.Rsp34AII
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.4 0.0 6.3e-11 6.3e-11 16 174 .. 151 303 .. 148 312 .. 0.79
Alignments for each domain:
== domain 1 score: 28.4 bits; conditional E-value: 6.3e-11
UPF0020 16 LAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelk.lygsDldrrvvqgareNaekagvgdli 105
L ++v+l + + ge ++DP GsG++lI a ++ + + +++ + g+++ ++ + + N g++ i
REBASE::M.Rsp34AII 151 LVNSMVKLMKPQLGELIQDPATGSGGFLIAADRFIRSTNS--------------QDAYNEKPPrYQGAEIEKNTRRICLMNTFLNGLDADI 227
6679*************************77666555552..............222222222477************************* PP
UPF0020 106 efsqadaakLrlkegevdvivtnpPYGerlgskkal.ekL.Yse......flrelkrvlrgggrlvlltaenkalek 174
+ +a + + + + +i++npP+G + gs ++l +L Y++ fl+ + l++ggr+++++++n +e+
REBASE::M.Rsp34AII 228 IYGDALTDDAN-TFEPASLILANPPFGSKAGSRRSLrADLpYHNankqlvFLQHIYLALAEGGRAAVVLPDNVLFED 303
*****999999.888999*****************966665654233333666666677788888888888777776 PP
Or compare REBASE::M.Rsp34AII to CDD or PaperBLAST