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Align REBASE::M.Rsp34AII to PF01170 (UPF0020)

REBASE::M.Rsp34AII has 468 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    1.9e-11   30.1   0.0    8.1e-11   28.1   0.0    2.0  2  REBASE::M.Rsp34AII  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Rsp34AII  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.45      0.45     139     159 ..      64      84 ..      61      97 .. 0.70
   2 !   28.1   0.0   8.1e-11   8.1e-11      16     174 ..     151     303 ..     148     314 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.45
                         HHHHHHHHHHHHHHHHH-TT. CS
             UPF0020 139 kalekLYseflrelkrvlrgg 159
                          +l ++Y+e+l+ l +++++ 
  REBASE::M.Rsp34AII  64 DRLLSFYQEMLTYLGNHVENA 84 
                         567889999999998888774 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 8.1e-11
                         HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--.EEEEES-HHHHHHHHHHHHHTT-GGGE CS
             UPF0020  16 LAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelk.lygsDldrrvvqgareNaekagvgdli 105
                         L  ++v+l + + ge ++DP  GsG++lI a    ++                 + + +++ +   g++++++  + +  N    g++  i
  REBASE::M.Rsp34AII 151 LVNSMVKLMKPQLGELIQDPATGSGGFLIAADRFIRSTNS--------------QDAYNEKPPrYQGAEIEKNTRRICLMNTFLNGLDADI 227
                         6679*************************77666655552..............222222222477************************* PP

                         EEEE--GGG--STTS---EEEE----------HHHH.HHH.HHH......HHHHHHHH-TT..-EEEEEESSHHHHH CS
             UPF0020 106 efsqadaakLrlkegevdvivtnpPYGerlgskkal.ekL.Yse......flrelkrvlrgggrlvlltsenkalek 174
                          + +a   + + + +   +i++npP+G + gs ++l  +L Y++      fl+ +   l++ggr+++++++n  +e+
  REBASE::M.Rsp34AII 228 IYGDALTDDAN-TFEPASLILANPPFGSKAGSRRSLrADLpYHNankqlvFLQHIYLALAEGGRAAVVLPDNVLFED 303
                         *****999999.888999*****************966665554223333666666677777888888887777776 PP



Or compare REBASE::M.Rsp34AII to CDD or PaperBLAST