PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.Sbo8700I to PF01170 (UPF0020)

REBASE::M.Sbo8700I has 555 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    2.8e-11   29.6   0.1    1.7e-10   27.0   0.1    2.2  2  REBASE::M.Sbo8700I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Sbo8700I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.14      0.14      65      87 ..      40      62 ..      14      68 .. 0.78
   2 !   27.0   0.1   1.7e-10   1.7e-10      20     140 ..     174     318 ..     168     344 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.14
                        HHHHHHHHHHHH--EEEEES-HH CS
             UPF0020 65 lkaeaeeearaelklygsDldrr 87
                        ++++ e++ +++ +++g+D+++r
  REBASE::M.Sbo8700I 40 MLDTQEQRDEKRKQIAGIDFKPR 62
                        66777778889999****99887 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 1.7e-10
                         HHHHTT..--TTS-EEETT-TTSHHHH...HHHHHHTT--TTTT----SS..............HHHHHHHHHHHH--EEEEES-HHHHHH CS
             UPF0020  20 lvrlag..wkpgepllDPmCGsGtilI...Eaallganiapgllrefvle..............lkaeaeeearaelklygsDldrrvvqg 91 
                         +v++ +    +ge++ DP CG+G++l    E  l + +     + e  ++              l++ ++++  ++  + g D+d  +++ 
  REBASE::M.Sbo8700I 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWRNHV-DNNMFHGYDFDTTMLRI 263
                         555554114579*************953335555555555444444444466666666665554333333322.34449************ PP

                         HHHHHHHTT-GGG.EEEEE--GGG--.....STTS---EEEE----------HHH CS
             UPF0020  92 areNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140
                         a  N+   gv+   i++++   +++      ++++ +++i++npP+  +l+++  
  REBASE::M.Sbo8700I 264 AAMNLIMHGVDAPdIHYQDTMSQSFStnfpqASKNAFNLILANPPFTGSLDEEDI 318
                         **********87449998888877776776877889***********99998865 PP



Or compare REBASE::M.Sbo8700I to CDD or PaperBLAST