REBASE::M.Sdy10956I has 544 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-11 30.1 0.1 1.2e-10 27.6 0.1 2.2 2 REBASE::M.Sdy10956I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Sdy10956I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.9 0.0 0.12 0.12 65 87 .. 40 62 .. 14 68 .. 0.78
2 ! 27.6 0.1 1.2e-10 1.2e-10 20 141 .. 174 319 .. 168 371 .. 0.74
Alignments for each domain:
== domain 1 score: -1.9 bits; conditional E-value: 0.12
UPF0020 65 lkaeaeeearaelklygsDldrr 87
++++ e++ +++ +++g+D+++r
REBASE::M.Sdy10956I 40 MLDTQEQRDEKRKQIAGIDFKPR 62
67777788889999*****9887 PP
== domain 2 score: 27.6 bits; conditional E-value: 1.2e-10
UPF0020 20 lvrlag..wkdgepllDPmCGsGtilI...Eaallganiapgllrefvye..............lkaeaeeearaelklygsDldrrvvq 90
+v++ + +ge++ DP CG+G++l E l + + + e ++ l++ ++++ ++ + g D+d +++
REBASE::M.Sdy10956I 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWRNHV-DNNMFHGYDFDTTMLR 262
665554114579*************953325455555555444444444466666666665554444433332.34449*********** PP
UPF0020 91 gareNaekagvgd.liefsqadaakLr.....lkegevdvivtnpPYGerlgskkal 141
a N+ gv+ i++++ +++ ++++ +++i++npP+ +l+++
REBASE::M.Sdy10956I 263 IAAMNLIMHGVDApNIHYQDTMSQSFStnfpqASKNAFNLILANPPFTGSLDEEDID 319
***********87358998888877776766877889***********999988654 PP
Or compare REBASE::M.Sdy10956I to CDD or PaperBLAST