REBASE::M.Sdy9752I has 544 amino acids
Query: UPF0020 [M=197] Accession: PF01170.22 Description: Putative RNA methylase family UPF0020 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-11 29.4 0.1 2.1e-10 26.8 0.0 2.2 2 REBASE::M.Sdy9752I Domain annotation for each sequence (and alignments): >> REBASE::M.Sdy9752I # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.12 0.12 65 87 .. 40 62 .. 14 68 .. 0.78 2 ! 26.8 0.0 2.1e-10 2.1e-10 20 140 .. 174 318 .. 168 344 .. 0.71 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.12 UPF0020 65 lkaeaeeearaelklygsDldrr 87 ++++ e++ +++ +++g+D+++r REBASE::M.Sdy9752I 40 MLDTQEQRDEKRKQIAGIDFKPR 62 67777788889999*****9887 PP == domain 2 score: 26.8 bits; conditional E-value: 2.1e-10 UPF0020 20 lvrlag..wkdgepllDPmCGsGtilI...Eaallganiapgllrefvye..............lkaeaeeearaelklygsDldrrvvqg 91 +v++ + +ge++ DP CG+G++l E l + + + e ++ l++ ++++ ++ + g D+d +++ REBASE::M.Sdy9752I 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWRNHV-DNNMFHGYDFDTTMLRI 263 665554114579*************953325455555555444444444466666666665554444433332.34449************ PP UPF0020 92 areNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140 a N+ gv+ i++++ +++ ++++ +++i++npP+ +l+++ REBASE::M.Sdy9752I 264 AAMNLIMHGVDAPdIHYQDTMSQSFStnfpqASKKAFNLILANPPFTGSLDEEDI 318 **********87449998888877776666877789***********99998765 PP
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