REBASE::M.Sen10729II has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-13 36.6 0.0 3.8e-13 35.7 0.0 1.5 1 REBASE::M.Sen10729II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Sen10729II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.7 0.0 3.8e-13 3.8e-13 18 135 .. 172 280 .. 168 344 .. 0.70
Alignments for each domain:
== domain 1 score: 35.7 bits; conditional E-value: 3.8e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106
+ +v + + k ge+++DP CG+G++l a ++n + +++ ++ ++++ g+++++ a +N g++ ++
REBASE::M.Sen10729II 172 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNHY-----------VKNVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQ 249
67999*********************77777777777...........2334445556778*******998889999999988888888 PP
UPF0020 107 fsqada..akLrlkegevdvivtnpPYGerl 135
++ + + L +++ dvivtnpP+G
REBASE::M.Sen10729II 250 IRHDNTlnKPLSSWDEQLDVIVTNPPFGGTE 280
88766511556677779***********643 PP
Or compare REBASE::M.Sen10729II to CDD or PaperBLAST