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Align REBASE::M.Sen11997I to PF01170 (UPF0020)

REBASE::M.Sen11997I has 544 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    1.3e-11   30.7   0.1    1.6e-10   27.1   0.1    2.5  2  REBASE::M.Sen11997I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Sen11997I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.04      0.04      65      91 ..      40      66 ..      10      87 .. 0.80
   2 !   27.1   0.1   1.6e-10   1.6e-10      20     140 ..     174     318 ..     168     334 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.04
                         HHHHHHHHHHHH--EEEEES-HHHHHH CS
              UPF0020 65 lkaeaeeearaelklygsDldrrvvqg 91
                         ++++ e++ +++ +++g+D+++r  q 
  REBASE::M.Sen11997I 40 MLDTQEQRDEKRKQIAGIDFKPRFAQE 66
                         67777788889999*****99998765 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.6e-10
                          HHHHTT..--TTS-EEETT-TTSHHHH...HHHHHHTT--TTTT----SS..............HHHHHHHHHH.......HH--EEEEE CS
              UPF0020  20 lvrlag..wkpgepllDPmCGsGtilI...Eaallganiapgllrefvle..............lkaeaeeear.......aelklygsD 83 
                          +v++ +    +ge++ DP CG+G++l    E  l + +     + e  ++              l                ++  + g D
  REBASE::M.Sen11997I 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdL--------LmpwrnhvDNNMFHGYD 255
                          555554114579*************9533355555555554444444444555555555555443........0444323233449**** PP

                          S-HHHHHHHHHHHHHTT-GGG.EEEEE--GGG--.....STTS---EEEE----------HHH CS
              UPF0020  84 ldrrvvqgareNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140
                          +d  +++ a  N+   gv+   i++++   +++      ++++ +++i++npP+  +l+++  
  REBASE::M.Sen11997I 256 FDTTMLRIAAMNLIMHGVEAPdIHYQDTMSQSFSanfpqASKNAFNLILANPPFTGSLDEEDI 318
                          ******************97549999888887777776877889***********99998765 PP



Or compare REBASE::M.Sen11997I to CDD or PaperBLAST