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Align REBASE::M.Sen11997I to PF01170 (UPF0020)

REBASE::M.Sen11997I has 544 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    1.2e-11   30.8   0.1    1.6e-10   27.1   0.1    2.5  2  REBASE::M.Sen11997I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Sen11997I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.038     0.038      65      91 ..      40      66 ..      10      86 .. 0.80
   2 !   27.1   0.1   1.6e-10   1.6e-10      20     140 ..     174     318 ..     168     334 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.038
              UPF0020 65 lkaeaeeearaelklygsDldrrvvqg 91
                         ++++ e++ +++ +++g+D+++r  q 
  REBASE::M.Sen11997I 40 MLDTQEQRDEKRKQIAGIDFKPRFAQE 66
                         67777888889999*****99998775 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.6e-10
              UPF0020  20 lvrlag..wkdgepllDPmCGsGtilI...Eaallganiapgllrefvye..............lkaeaeeearaelklygsDldrrvvq 90 
                          +v++ +    +ge++ DP CG+G++l    E  l + +     + e  ++              l+  ++++  ++  + g D+d  +++
  REBASE::M.Sen11997I 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLMPWRNHV-DNNMFHGYDFDTTMLR 262
                          665554114579*************953335555555555444444444456656555555544333333322.33449*********** PP

              UPF0020  91 gareNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140
                           a  N+   gv+   i++++   +++      ++++ +++i++npP+  +l+++  
  REBASE::M.Sen11997I 263 IAAMNLIMHGVEAPdIHYQDTMSQSFSanfpqASKNAFNLILANPPFTGSLDEEDI 318
                          ***********97549999888887777776877889***********99998765 PP



Or compare REBASE::M.Sen11997I to CDD or PaperBLAST