REBASE::M.Sen18747II has 544 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-12 33.2 0.1 1.8e-11 30.2 0.0 2.3 2 REBASE::M.Sen18747II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Sen18747II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 0.0 0.095 0.095 65 87 .. 40 62 .. 12 68 .. 0.78
2 ! 30.2 0.0 1.8e-11 1.8e-11 20 139 .. 174 317 .. 168 334 .. 0.71
Alignments for each domain:
== domain 1 score: -1.5 bits; conditional E-value: 0.095
UPF0020 65 lkaeaeeearaelklygsDldrr 87
++++ e++ +++ +++g+D+++r
REBASE::M.Sen18747II 40 MLDTQEQRDEKRKQIAGVDFKPR 62
67777888889999*****9887 PP
== domain 2 score: 30.2 bits; conditional E-value: 1.8e-11
UPF0020 20 lvrlag..wkdgepllDPmCGsGtilI...Eaallganiapgllrefvye..............lkaeaeeearaelklygsDldrrvv 89
+v++ + +ge++ DP CG+G++l E l + + + e ++ l++ ++++ ++ + g D+d ++
REBASE::M.Sen18747II 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWRNHV-DNNMFHGYDFDTTML 261
665554114579*************953325455555555444444444466666666665554444433332.34449********** PP
UPF0020 90 qgareNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskk 139
+ a N+ gv++ i++++ +++ ++++++++i++npP+ +l+++
REBASE::M.Sen18747II 262 RIAAMNLIMHGVEEPdIHYQDTMSQSFStnfpqASKNSFNLILANPPFTGSLDEED 317
************9854999988888777777788888************9999876 PP
Or compare REBASE::M.Sen18747II to CDD or PaperBLAST