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Align REBASE::M.Sen18747II to PF01170 (UPF0020)

REBASE::M.Sen18747II has 544 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    2.5e-12   33.0   0.1    1.8e-11   30.2   0.0    2.3  2  REBASE::M.Sen18747II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Sen18747II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0     0.098     0.098      65      87 ..      40      62 ..      12      69 .. 0.77
   2 !   30.2   0.0   1.8e-11   1.8e-11      20     139 ..     174     317 ..     168     334 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.098
                          HHHHHHHHHHHH--EEEEES-HH CS
               UPF0020 65 lkaeaeeearaelklygsDldrr 87
                          ++++ e++ +++ +++g+D+++r
  REBASE::M.Sen18747II 40 MLDTQEQRDEKRKQIAGVDFKPR 62
                          67777888889999*****9887 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 1.8e-11
                           HHHHTT..--TTS-EEETT-TTSHHHH...HHHHHHTT--TTTT----SS..............HHHHHHHHHHHH--EEEEES-HHHH CS
               UPF0020  20 lvrlag..wkpgepllDPmCGsGtilI...Eaallganiapgllrefvle..............lkaeaeeearaelklygsDldrrvv 89 
                           +v++ +    +ge++ DP CG+G++l    E  l + +     + e  ++              l++ ++++  ++  + g D+d  ++
  REBASE::M.Sen18747II 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWRNHV-DNNMFHGYDFDTTML 261
                           555554114579*************953335555555555444444444466666666665554333333322.34449********** PP

                           HHHHHHHHHTT-GGG.EEEEE--GGG--.....STTS---EEEE----------HH CS
               UPF0020  90 qgareNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskk 139
                           + a  N+   gv++  i++++   +++      ++++++++i++npP+  +l+++ 
  REBASE::M.Sen18747II 262 RIAAMNLIMHGVEEPdIHYQDTMSQSFStnfpqASKNSFNLILANPPFTGSLDEED 317
                           ************9855999988888777777788888************9999876 PP



Or compare REBASE::M.Sen18747II to CDD or PaperBLAST