PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.Sen1903II to PF01170 (UPF0020)

REBASE::M.Sen1903II has 493 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    1.3e-13   37.2   0.0    2.8e-13   36.1   0.0    1.5  1  REBASE::M.Sen1903II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Sen1903II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   2.8e-13   2.8e-13      18     171 ..     176     328 ..     172     349 .. 0.72

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.8e-13
              UPF0020  18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
                          + +v + + k ge+++DP CG+G++l  a   ++n +            + +  ++  ++++ g+++++     a +N    g++  +++
  REBASE::M.Sen1903II 176 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNNY-----------VQSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQI 254
                          67999*********************77766666666...........3455556667788*******9988899999999998888888 PP

              UPF0020 108 sqada..akLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltaenka 171
                          +  +   + L   +++ dvivtnpP+G   ++        + + ++  + fl+ + +vl+++gr+++++++   
  REBASE::M.Sen1903II 255 RHDNTlnKPLSSWDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGTL 328
                          8766511556677779***********65333111111113344555666777888888888888887776655 PP



Or compare REBASE::M.Sen1903II to CDD or PaperBLAST