REBASE::M.Sen2159III has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.9e-13 35.6 0.0 8.2e-13 34.6 0.0 1.5 1 REBASE::M.Sen2159III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Sen2159III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.6 0.0 8.2e-13 8.2e-13 18 134 .. 172 279 .. 168 344 .. 0.71
Alignments for each domain:
== domain 1 score: 34.6 bits; conditional E-value: 8.2e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106
+ +v++ + k ge+++DP CG+G++l a ++n ++ +++ ++ + ++ g+++++ + +N g++ ++
REBASE::M.Sen2159III 172 RFMVERVDPKLGESIMDPACGTGGFLACAFDHVKNHYA-----------HTVTDHQILQKQIHGVEKKQLPHLLCTTNMLLHGIEVPVQ 249
679***********************877777777773...........233334445667*******999999999999999999999 PP
UPF0020 107 fsqada..akLrlkegevdvivtnpPYGer 134
++ + + L ++++dvi+tnpP+G
REBASE::M.Sen2159III 250 IRHDNTlnKPLSSWDEQMDVIITNPPFGGT 279
98866511456677779***********64 PP
Or compare REBASE::M.Sen2159III to CDD or PaperBLAST