REBASE::M.Sen3124II has 476 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.7e-13 35.7 0.0 7.8e-13 34.7 0.0 1.5 1 REBASE::M.Sen3124II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Sen3124II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.7 0.0 7.8e-13 7.8e-13 18 134 .. 159 266 .. 155 331 .. 0.71
Alignments for each domain:
== domain 1 score: 34.7 bits; conditional E-value: 7.8e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
+ +v++ + k ge+++DP CG+G++l a ++n ++ +++ ++ + ++ g+++++ + +N g++ +++
REBASE::M.Sen3124II 159 RFMVERVDPKLGESIMDPACGTGGFLACAFDHVKNHYA-----------HTVTDHQILQKQIHGVEKKQLPHLLCTTNMLLHGIEVPVQI 237
679***********************877777777773...........233334445667*******9999999999999999999999 PP
UPF0020 108 sqada..akLrlkegevdvivtnpPYGer 134
+ + + L ++++dvi+tnpP+G
REBASE::M.Sen3124II 238 RHDNTlnKPLSSWDEQMDVIITNPPFGGT 266
8866511456677779***********64 PP
Or compare REBASE::M.Sen3124II to CDD or PaperBLAST