PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.Sen313III to PF01170 (UPF0020)

REBASE::M.Sen313III has 489 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    7.7e-13   34.7   0.0    1.7e-12   33.6   0.0    1.6  1  REBASE::M.Sen313III  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Sen313III  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.7e-12   1.7e-12      18     134 ..     172     279 ..     168     344 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.7e-12
                          HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEE CS
              UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
                          + +v++ + k ge+++DP CG+G++l  a   ++n ++           +++  ++  + ++ g+++++     + +N    g++  +++
  REBASE::M.Sen313III 172 RFMVERVDPKLGESIMDPACGTGGFLACAFDHVKNHYA-----------HTVTDHQLLQRQIHGVEKKQLPHLLCTTNMLLHGIEVPVQI 250
                          679***********************877777777773...........233444446667*******9999999999999999999999 PP

                          EE--G..GG--STTS---EEEE------- CS
              UPF0020 108 sqada..akLrlkegevdvivtnpPYGer 134
                          +  +   + L   ++++dvi+tnpP+G  
  REBASE::M.Sen313III 251 RHDNTlnKPLSSWDEQMDVIITNPPFGGT 279
                          8866511456677779***********54 PP



Or compare REBASE::M.Sen313III to CDD or PaperBLAST