REBASE::M.Sen313III has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.1e-13 35.3 0.0 1.1e-12 34.2 0.0 1.5 1 REBASE::M.Sen313III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Sen313III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.2 0.0 1.1e-12 1.1e-12 18 134 .. 172 279 .. 168 344 .. 0.71
Alignments for each domain:
== domain 1 score: 34.2 bits; conditional E-value: 1.1e-12
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
+ +v++ + k ge+++DP CG+G++l a ++n ++ +++ ++ + ++ g+++++ + +N g++ +++
REBASE::M.Sen313III 172 RFMVERVDPKLGESIMDPACGTGGFLACAFDHVKNHYA-----------HTVTDHQLLQRQIHGVEKKQLPHLLCTTNMLLHGIEVPVQI 250
679***********************877777777773...........233444446667*******9999999999999999999999 PP
UPF0020 108 sqada..akLrlkegevdvivtnpPYGer 134
+ + + L ++++dvi+tnpP+G
REBASE::M.Sen313III 251 RHDNTlnKPLSSWDEQMDVIITNPPFGGT 279
8866511456677779***********64 PP
Or compare REBASE::M.Sen313III to CDD or PaperBLAST