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Align REBASE::M.Sen51295III to PF01170 (UPF0020)

REBASE::M.Sen51295III has 544 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    1.8e-11   30.2   0.0    1.3e-10   27.4   0.0    2.3  2  REBASE::M.Sen51295III  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Sen51295III  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0     0.098     0.098      65      87 ..      40      62 ..      12      69 .. 0.77
   2 !   27.4   0.0   1.3e-10   1.3e-10      20     140 ..     174     318 ..     168     334 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.098
                           HHHHHHHHHHHH--EEEEES-HH CS
                UPF0020 65 lkaeaeeearaelklygsDldrr 87
                           ++++ e++ +++ +++g+D+++r
  REBASE::M.Sen51295III 40 MLDTQEQRDEKRKQIAGVDFKPR 62
                           67777888889999*****9887 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 1.3e-10
                            HHHHTT..--TTS-EEETT-TTSHHHH...HHHHHHTT--TTTT----SS..............HHHHHHHHHHHH--EEEEES-HHH CS
                UPF0020  20 lvrlag..wkpgepllDPmCGsGtilI...Eaallganiapgllrefvle..............lkaeaeeearaelklygsDldrrv 88 
                            +v++ +    +ge++ DP CG+G++l    E  l + +     + e  ++              l++ ++ +  ++  + g D+d  +
  REBASE::M.Sen51295III 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWRDH-VDNNMFHGYDFDTTM 260
                            555554114579*************95333555555555544444444446666656655555433333322.244459********* PP

                            HHHHHHHHHHTT-GGG.EEEEE--GGG--.....STTS---EEEE----------HHH CS
                UPF0020  89 vqgareNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140
                            ++ a  N+   gv+   i++++   +++      ++++ +++i++npP+  +l+++  
  REBASE::M.Sen51295III 261 LRIAAMNLIMHGVESPdIHYQDTMSQSFSanfpqASKNAFNLILANPPFTGSLDEEDI 318
                            *************97549999888887777776877889***********99998765 PP



Or compare REBASE::M.Sen51295III to CDD or PaperBLAST