REBASE::M.Sen51295III has 544 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-11 30.3 0.0 1.2e-10 27.5 0.0 2.3 2 REBASE::M.Sen51295III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Sen51295III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 0.0 0.095 0.095 65 87 .. 40 62 .. 12 68 .. 0.78
2 ! 27.5 0.0 1.2e-10 1.2e-10 20 140 .. 174 318 .. 168 344 .. 0.71
Alignments for each domain:
== domain 1 score: -1.5 bits; conditional E-value: 0.095
UPF0020 65 lkaeaeeearaelklygsDldrr 87
++++ e++ +++ +++g+D+++r
REBASE::M.Sen51295III 40 MLDTQEQRDEKRKQIAGVDFKPR 62
67777888889999*****9887 PP
== domain 2 score: 27.5 bits; conditional E-value: 1.2e-10
UPF0020 20 lvrlag..wkdgepllDPmCGsGtilI...Eaallganiapgllrefvye..............lkaeaeeearaelklygsDldrrv 88
+v++ + +ge++ DP CG+G++l E l + + + e ++ l++ ++ + ++ + g D+d +
REBASE::M.Sen51295III 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWRDH-VDNNMFHGYDFDTTM 260
665554114579*************95333555555555544444444446666666666555433333322.244459********* PP
UPF0020 89 vqgareNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140
++ a N+ gv+ i++++ +++ ++++ +++i++npP+ +l+++
REBASE::M.Sen51295III 261 LRIAAMNLIMHGVESPdIHYQDTMSQSFSanfpqASKNAFNLILANPPFTGSLDEEDI 318
*************97549999888887777776877889***********99998765 PP
Or compare REBASE::M.Sen51295III to CDD or PaperBLAST