REBASE::M.SenPU131II has 512 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-11 30.8 0.7 3.2e-10 26.1 0.2 2.8 2 REBASE::M.SenPU131II
Domain annotation for each sequence (and alignments):
>> REBASE::M.SenPU131II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.8 0.0 0.12 0.12 137 156 .. 159 178 .. 155 184 .. 0.77
2 ! 26.1 0.2 3.2e-10 3.2e-10 19 132 .. 193 298 .. 190 309 .. 0.83
Alignments for each domain:
== domain 1 score: -1.8 bits; conditional E-value: 0.12
UPF0020 137 skkalekLYseflrelkrvl 156
+ ++l +LY+ +lre+
REBASE::M.SenPU131II 159 EMHTLSRLYETMLREMRDAA 178
5677899********98755 PP
== domain 2 score: 26.1 bits; conditional E-value: 3.2e-10
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgd.li 105
+v++ + + ge+ lDP CG+G++l+Ea ++ +++e ++ +e +++g + ++ + N+ g++ +i
REBASE::M.SenPU131II 193 FMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQC------------KTVEDREVlQESSIFGGEAKSLPYLLVQMNLLLHGLEYpRI 269
599999*********************977666666............4566666667788******9999999999999999986368 PP
UPF0020 106 efsqadaakLr..lkegevdvivtnpPYG 132
+ ++ Lr +++ vdvi+tnpP+G
REBASE::M.SenPU131II 270 DPENSLRFPLRemGDKDRVDVILTNPPFG 298
888888888886656679**********9 PP
Or compare REBASE::M.SenPU131II to CDD or PaperBLAST