REBASE::M.Sgl8271II has 701 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-10 27.8 0.0 2.4e-10 26.6 0.0 1.6 1 REBASE::M.Sgl8271II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Sgl8271II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.6 0.0 2.4e-10 2.4e-10 31 135 .. 237 341 .. 232 375 .. 0.77
Alignments for each domain:
== domain 1 score: 26.6 bits; conditional E-value: 2.4e-10
UPF0020 31 pllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekag....vgdliefsqadaakL 115
++lDP CGsG +l+ l ++ ++ + e+e+ e ++g+D+d+ +v +r N+ + v + +++++ +a +
REBASE::M.Sgl8271II 237 RILDPCCGSGNFLLTVFLALKSNLVQKG-------LPPGEAEKLlLEECIFGFDIDSTAVWLCRVNLLLLCdtdfVPGNWHIQCDNALMG 319
79***********988776555552333.......22222222223344*****************987763333677889999888877 PP
UPF0020 116 r..lkegevdvivtnpPYGerl 135
+ + +g++d+i++npP+G
REBASE::M.Sgl8271II 320 HskKISGKFDLIIGNPPWGSDF 341
7766678************865 PP
Or compare REBASE::M.Sgl8271II to CDD or PaperBLAST