REBASE::M.SliSII has 523 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.8e-11 29.2 0.0 8.1e-11 28.1 0.0 1.5 1 REBASE::M.SliSII
Domain annotation for each sequence (and alignments):
>> REBASE::M.SliSII
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.1 0.0 8.1e-11 8.1e-11 31 132 .. 192 277 .. 184 288 .. 0.92
Alignments for each domain:
== domain 1 score: 28.1 bits; conditional E-value: 8.1e-11
UPF0020 31 pllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevd 123
++lDP CGsG++ + a ++n ++ e+++yg ++ ++ v+ ++ N+ g+++ i + + ++++ g +d
REBASE::M.SliSII 192 RILDPACGSGGMFVQSARFVQNHK----------------KNPSSEISIYGQEKVAETVRLCKMNLAVHGLSGDIRQANTYYENVHNCIGRFD 268
79****************999999................44559999**************************************9999*** PP
UPF0020 124 vivtnpPYG 132
+ +npP+
REBASE::M.SliSII 269 FVMANPPFN 277
*******95 PP
Or compare REBASE::M.SliSII to CDD or PaperBLAST