REBASE::M.Spu10737II has 500 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-13 36.6 0.0 4.9e-13 35.3 0.0 1.6 1 REBASE::M.Spu10737II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Spu10737II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.3 0.0 4.9e-13 4.9e-13 18 133 .. 172 278 .. 168 295 .. 0.79
Alignments for each domain:
== domain 1 score: 35.3 bits; conditional E-value: 4.9e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106
+v +++ k ge+++DP CG+G++l + ++ + ++a ++ ++++ g+++++ + +N g++ ++
REBASE::M.Spu10737II 172 KFIVAVTDPKLGESIMDPACGTGGFLA---CAFDHVKAN--------YVKTADDHQTLQQQIHGVEKKQLPHLLCTTNMMLHGIEVPVQ 249
568999*******************94...334444422........23566666667888********99999999999999999999 PP
UPF0020 107 fsqadaakLr..lkegevdvivtnpPYGe 133
++ + + + ++++dvi+tnpP+G
REBASE::M.Spu10737II 250 IKHGNTLNKPlsSWDEDIDVIITNPPFGG 278
99988765443366779**********95 PP
Or compare REBASE::M.Spu10737II to CDD or PaperBLAST