PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.Sru10036I to PF01170 (UPF0020)

REBASE::M.Sru10036I has 490 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
      1e-13   37.5   0.0      2e-13   36.6   0.0    1.5  1  REBASE::M.Sru10036I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Sru10036I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0     2e-13     2e-13      18     134 ..     172     279 ..     168     340 .. 0.75

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2e-13
              UPF0020  18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
                          + +v++ + k ge+++DP CG+G++l  a+      a+           ++ e ++  + ++ g+++++     + +N    g++  +++
  REBASE::M.Sru10036I 172 RFMVNRIDPKLGESIMDPACGTGGFL--ACAFDHVKAH---------YVNTTEDHKTLQRQIHGVEKKQLPHLLCTTNMLLHGIEVPVQI 250
                          679**********************9..4444444442.........23455555556777*******9999999999999999999999 PP

              UPF0020 108 sqada..akLrlkegevdvivtnpPYGer 134
                          +  +   + L   +++vdvivtnpP+G  
  REBASE::M.Sru10036I 251 RHDNTlnKPLSSWDEQVDVIVTNPPFGGT 279
                          8866511456677779***********54 PP



Or compare REBASE::M.Sru10036I to CDD or PaperBLAST