REBASE::M.Ssp13II has 552 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.1e-15 41.5 0.0 1.1e-14 40.7 0.0 1.4 1 REBASE::M.Ssp13II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Ssp13II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.7 0.0 1.1e-14 1.1e-14 20 144 .. 219 355 .. 213 406 .. 0.76
Alignments for each domain:
== domain 1 score: 40.7 bits; conditional E-value: 1.1e-14
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeearaelk..lygsDldrrvvqgareNa 96
l +l++ k g++++DP CG+G++l+ a + + +r++ + + + ++++ l+ +yg+D+d +v+ + N+
REBASE::M.Ssp13II 219 LAELTEPKLGHKIADPACGTGGFLLGAYQYILSDL---VRKKEPDllqadedgferasISSVLDDKNKKILNdsFYGFDIDTTMVRLGLMNL 307
67899********************9976655555...344433344478888888764444444455555567****************** PP
UPF0020 97 ekagvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalekL 144
g+++ ie+++ ++ + ++g++d++++npP+ +l++ + +L
REBASE::M.Ssp13II 308 MMHGIDNpHIEYKDTLSKNYN-ESGNYDIVLANPPFTGKLDKGDVNPDL 355
*****983699***9999999.8899**********9999887766666 PP
Or compare REBASE::M.Ssp13II to CDD or PaperBLAST