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Align REBASE::M.SspRSPHI to PF01170 (UPF0020)

REBASE::M.SspRSPHI has 490 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    2.6e-14   39.5   0.0    4.5e-14   38.7   0.0    1.3  1  REBASE::M.SspRSPHI  


Domain annotation for each sequence (and alignments):
>> REBASE::M.SspRSPHI  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   4.5e-14   4.5e-14      18     135 ..     155     263 ..     151     271 .. 0.82

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 4.5e-14
                         HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEE.E CS
             UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie.f 107
                          a+v++ + +p e+  DP  G+G++l+ a    ++ ++         + ++a ++  +e kl g D+ ++vv+ +  N+   g+g+  + +
  REBASE::M.SspRSPHI 155 DAIVEVMDPQPSETVHDPAAGTGGFLLSAYDHMRQQPA---------ATDRAVARRLRETKLSGNDIVPEVVRLCAMNLYLHGIGGDQSpV 236
                         5899***********************99866666653.........34566666668999***********************9766515 PP

                         EE--GGG--STTS---EEEE-------- CS
             UPF0020 108 sqadaakLrlkegevdvivtnpPYGerl 135
                         + ada     + g +dvi++npP+G+r 
  REBASE::M.SspRSPHI 237 RHADALTAD-DGGRYDVILSNPPFGKRQ 263
                         555555444.667*************95 PP



Or compare REBASE::M.SspRSPHI to CDD or PaperBLAST