REBASE::M.SspSC18I has 554 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.1e-17 47.5 0.0 1.5e-16 46.8 0.0 1.3 1 REBASE::M.SspSC18I
Domain annotation for each sequence (and alignments):
>> REBASE::M.SspSC18I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.8 0.0 1.5e-16 1.5e-16 20 165 .. 201 365 .. 196 389 .. 0.77
Alignments for each domain:
== domain 1 score: 46.8 bits; conditional E-value: 1.5e-16
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..........lkaeaeeearaelk..lygsDldrrvvqgareNaek 98
+ l + + g++++DP CGsG++l+ a + + +++ + + + a + e+a+a l l+g D+d+ +v+ + N+
REBASE::M.SspSC18I 201 MADLVQPQLGHKIADPACGSGGFLLGAYQYIVTELAKKADARDIRpdedgftrtsVAAALTEKAQAILAssLWGYDIDQTMVRLGLMNLMM 291
6667788999***************9988777666555544444488999988875555555555443346******************** PP
UPF0020 99 agvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYse.......flrelkrvlrgggrlvll 165
g+++ +i++++ ++ + +e+e+d++ +npP+ ++++ +e+L + f + + r l++gg ++++
REBASE::M.SspSC18I 292 HGIDEpRIDYKDTLSKSYT-EEAEYDIVMANPPFTGSIDKGDINEHLQLAttktellFVENIYRLLKKGGTACVI 365
***87469********999.888****************999999886551112222344555566666666655 PP
Or compare REBASE::M.SspSC18I to CDD or PaperBLAST