REBASE::M.Sth20745II has 507 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.8e-13 34.5 0.0 3.5e-12 32.5 0.0 1.9 2 REBASE::M.Sth20745II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Sth20745II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.5 0.0 3.5e-12 3.5e-12 18 134 .. 161 274 .. 157 283 .. 0.79
2 ? -2.1 0.0 0.14 0.14 148 178 .. 309 339 .. 303 353 .. 0.81
Alignments for each domain:
== domain 1 score: 32.5 bits; conditional E-value: 3.5e-12
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvg... 102
a+v + + ++ge++ DP CG+G++l+ a +++p l e++++ + l+g+++ +v++ + N+ gvg
REBASE::M.Sth20745II 161 QAIVDVMRPQPGETICDPACGTGGFLLAAHNSIVERYPHLD----------PEQRKHlKLHALRGVEIVDSVTRLCAMNLLLHGVGpgp 239
69999***********************9999999998444..........333333244459****************9998886322 PP
UPF0020 103 ..dliefsqadaakLr.lkegevdvivtnpPYGer 134
ie + +L+ ++++ +dv++tnpP+G++
REBASE::M.Sth20745II 240 aeADIEPPVRTGDSLNsAPSDHFDVVLTNPPFGRK 274
224455555556667767999************86 PP
== domain 2 score: -2.1 bits; conditional E-value: 0.14
UPF0020 148 flrelkrvlrgggrlvlltaenkalekalee 178
f + +k+ l+ +gr+++++++n +e ++e
REBASE::M.Sth20745II 309 FVQHVKSLLKIHGRAAVVVPDNVLFEGGAGE 339
788999999999*******999999876665 PP
Or compare REBASE::M.Sth20745II to CDD or PaperBLAST