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Align REBASE::M.Sth6578I to PF01170 (UPF0020)

REBASE::M.Sth6578I has 552 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    1.1e-16   47.2   0.0    2.1e-16   46.3   0.0    1.4  1  REBASE::M.Sth6578I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Sth6578I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   2.1e-16   2.1e-16      20     182 ..     196     367 ..     190     376 .. 0.76

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 2.1e-16
                         HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE. CS
             UPF0020  20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsq. 109
                         +v++ + + ge+++DP CG+G++ +  a  + ++     r++++ + +e   ++ +e +l+g++  + v + a  N    + g +  +++ 
  REBASE::M.Sth6578I 196 MVQIIDPEIGETIYDPACGTGGFIVR-AFEWVRAK--IERKTISAAEKERLLRNLKEKHLIGVEHVPIVFKLALMNMILHKDGSSLLQNDd 283
                         99999******************885.56665555..4677777777777777778888*****************876666555544431 PP

                         ...--GGG--STTS---EEEE-----....-----HHHHHHHHHH.HHHHHHHH-TT..-EEEEEES.....SHHHHHCC---ESE CS
             UPF0020 110 ...adaakLrlkegevdvivtnpPYG....erlgskkalekLYse.flrelkrvlrgggrlvlltse.....nkalekaleeralr 182
                             +a++++ k+ ++dvi++npP+G    erl + +   kLY++ f + + + lr ggr++++++e     +k++ +a++++ ++
  REBASE::M.Sth6578I 284 slsNKAQDIH-KN-KYDVILANPPFGptkqERLAQFEYHIKLYEAlFIQHMMNALRPGGRAAVVLKEgllfdSKKMLRAICRKLVE 367
                         1115788888.55.8***********7777799999999****98579***************99872222234444455554444 PP



Or compare REBASE::M.Sth6578I to CDD or PaperBLAST