REBASE::M.StySKI has 493 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-13 36.1 0.0 5.8e-13 35.1 0.0 1.5 1 REBASE::M.StySKI
Domain annotation for each sequence (and alignments):
>> REBASE::M.StySKI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.1 0.0 5.8e-13 5.8e-13 18 135 .. 176 284 .. 172 348 .. 0.69
Alignments for each domain:
== domain 1 score: 35.1 bits; conditional E-value: 5.8e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqa 110
+ +v + + k ge+++DP CG+G++l a ++n + + + ++ ++++ g+++++ a +N g++ ++++
REBASE::M.StySKI 176 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNNY-----------VKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQIRHD 257
67999*********************77766666666...........2344445556777*******9988899999999988888888876 PP
UPF0020 111 da..akLrlkegevdvivtnpPYGerl 135
+ + L +++ dvivtnpP+G
REBASE::M.StySKI 258 NTlnKPLSSWDEQLDVIVTNPPFGGTE 284
6511556677779***********643 PP
Or compare REBASE::M.StySKI to CDD or PaperBLAST