PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.Tal28II to PF01170 (UPF0020)

REBASE::M.Tal28II has 513 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    3.6e-12   32.5   0.0    1.7e-11   30.3   0.0    2.1  2  REBASE::M.Tal28II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Tal28II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.19      0.19     142     166 ..      60      84 ..      58      93 .. 0.81
   2 !   30.3   0.0   1.7e-11   1.7e-11      20     131 ..     203     301 ..     197     312 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.19
                        HHHHHHHHHHHHHH-TT..-EEEEE CS
            UPF0020 142 ekLYseflrelkrvlrgggrlvllt 166
                        ++L + fl+e++r++++ g l l++
  REBASE::M.Tal28II  60 KRLSDVFLEEAARIFAQTGNLHLAM 84 
                        678899999****999998877665 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 1.7e-11
                        HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT.-GGGEEEEE- CS
            UPF0020  20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekag.vgdliefsqa 110
                        lv+l + ++g ++ DP CGsG++lIE a  +++                    ++++l l g +++ +  + ++ N+   g ++++ief + 
  REBASE::M.Tal28II 203 LVELLDPQAGMMICDPTCGSGGMLIECAKHVERSG-----------------GQERQLTLHGQEKNMNTWAICKMNLLLHGlIDHQIEFGDT 277
                        89999************************999999.................56678899****************9877736889999875 PP

                        .-GGG--..STTS---EEEE---- CS
            UPF0020 111 .daakLr..lkegevdvivtnpPY 131
                            kL+   + + +d +++npP+
  REBASE::M.Tal28II 278 iRTPKLTegSRLKRYDRVIANPPF 301
                        15668987644448*********9 PP



Or compare REBASE::M.Tal28II to CDD or PaperBLAST