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Align REBASE::M.TcoKWC4IV to PF01170 (UPF0020)

REBASE::M.TcoKWC4IV has 489 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    2.3e-12   33.2   0.0    4.5e-12   32.2   0.0    1.5  1  REBASE::M.TcoKWC4IV  


Domain annotation for each sequence (and alignments):
>> REBASE::M.TcoKWC4IV  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   4.5e-12   4.5e-12      20     149 ..     176     297 ..     170     352 .. 0.74

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 4.5e-12
                          HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH.HH--EEEEES-HHHHHHHHHHHHHTT-GG.GEEE CS
              UPF0020  20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear.aelklygsDldrrvvqgareNaekagvgd.lief 107
                          +vrl + +p++++ DP CG+ ++l+ aa   ++               + e+ ++ a   + g+D dr +++ +  N+    +++ +i++
  REBASE::M.TcoKWC4IV 176 MVRLLKPTPDDRICDPACGTAGFLVSAAEYIRETHGNR---------MTPEQWEHfASSLMTGFDTDRTMLRLSAMNLMLHSITNpRIDY 256
                          99**************************9999988322.........233333333334499****************999887725777 PP

                          EE--GGG--STTS---EEEE----------HHHHHHHHHHHH CS
              UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgskkalekLYsefl 149
                           +   ++ +   +e+ +i++npP+   ++++   ++L   + 
  REBASE::M.TcoKWC4IV 257 LDSVSKENN-HASEFSIILANPPFTGTVDAESIHDNLKAVCN 297
                          765444444.6779**********999988887777766554 PP



Or compare REBASE::M.TcoKWC4IV to CDD or PaperBLAST