REBASE::M.TcoKWC4V has 711 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4e-10 25.8 0.0 1.8e-09 23.7 0.0 2.0 1 REBASE::M.TcoKWC4V
Domain annotation for each sequence (and alignments):
>> REBASE::M.TcoKWC4V
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.7 0.0 1.8e-09 1.8e-09 31 138 .. 239 353 .. 212 377 .. 0.72
Alignments for each domain:
== domain 1 score: 23.7 bits; conditional E-value: 1.8e-09
UPF0020 31 pllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaeka......gvgdliefsqadaakL 115
+ +DP CGsG ilI l +++ + +ea + ra+ l+g+D+d +v+ ar N+ g+ ++ da
REBASE::M.TcoKWC4V 239 RVIDPCCGSGNILIRVYLALKRRLT--A---RGLSAREADRMLRAHGALAGFDIDGTAVHLARLNLALLaepdggGMPAGFPIRRQDALRA 324
579***********99888888872..2...22345666666777778*****************97641222113334455555566555 PP
UPF0020 116 r.....lkeg.evdvivtnpPYGerlgsk 138
+ ++eg +d++++npP+G +
REBASE::M.TcoKWC4V 325 PsrhpeEPEGgRYDLVIGNPPWGYQFAPE 353
566777556569***********877654 PP
Or compare REBASE::M.TcoKWC4V to CDD or PaperBLAST