REBASE::M.Tpa10741I has 500 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-14 39.8 0.0 3.7e-14 39.0 0.0 1.4 1 REBASE::M.Tpa10741I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Tpa10741I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.0 0.0 3.7e-14 3.7e-14 20 149 .. 185 308 .. 179 364 .. 0.77
Alignments for each domain:
== domain 1 score: 39.0 bits; conditional E-value: 3.7e-14
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdl.ief 107
+v l k+g+ + DP CG+ ++l+ a ++ p+++ ++ e++++ ++ + g D+d+ +++ + N gv++ i +
REBASE::M.Tpa10741I 185 MVDLMAPKPGDEICDPACGTAGFLVAASEYIREQHPQAM--------SNTEQRNHfHRSMFHGYDFDSTMLRIGSMNMLLHGVDQPdIRY 266
99999***********************99999999888........5555666657777***********************9855*** PP
UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgskkalekLYsefl 149
++ ++ + +++ +i++npP+ +l+ + + ++L + +
REBASE::M.Tpa10741I 267 RDSLSESVSGDAEKYTLILANPPFAGSLDYESTSKDLQRMVK 308
*********77779**************99998888876533 PP
Or compare REBASE::M.Tpa10741I to CDD or PaperBLAST