REBASE::M.Tsp23208II has 512 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-11 29.9 0.1 1.1e-10 27.7 0.1 2.0 1 REBASE::M.Tsp23208II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Tsp23208II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.7 0.1 1.1e-10 1.1e-10 20 131 .. 203 301 .. 197 320 .. 0.75
Alignments for each domain:
== domain 1 score: 27.7 bits; conditional E-value: 1.1e-10
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagv.gdlief 107
lv+l + ++g ++ DP CGsG++lIE a +++ g+ ++l l g +++ + + ++ N+ g+ +++ie+
REBASE::M.Tsp23208II 203 LVELLDPQEGMMISDPTCGSGGMLIECAKHVEQSGGGA-----------------RRLTLHGQEKNMNTWAICKLNLLLHGLlDHQIEL 274
89999************************999999544.................4677888888888888888887766641445666 PP
UPF0020 108 sqa.daakLr..lkegevdvivtnpPY 131
+ kL + +++d++++npP+
REBASE::M.Tsp23208II 275 GDTiRTPKLVeaDRLKQYDLVIANPPF 301
553133344443233389999999998 PP
Or compare REBASE::M.Tsp23208II to CDD or PaperBLAST