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Align REBASE::M.Tsp23208II to PF01170 (UPF0020)

REBASE::M.Tsp23208II has 512 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    2.6e-11   29.7   0.1    1.4e-10   27.3   0.1    2.1  1  REBASE::M.Tsp23208II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Tsp23208II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   1.4e-10   1.4e-10      20     131 ..     203     301 ..     197     320 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.4e-10
                           HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-.GGGEEE CS
               UPF0020  20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagv.gdlief 107
                           lv+l + ++g ++ DP CGsG++lIE a  +++   g+                  +l l g +++ +  + ++ N+   g+ +++ie+
  REBASE::M.Tsp23208II 203 LVELLDPQEGMMISDPTCGSGGMLIECAKHVEQSGGGAR-----------------RLTLHGQEKNMNTWAICKLNLLLHGLlDHQIEL 274
                           89999************************9999995444.................566778888888888888887666541445665 PP

                           EE-.-GGG--..STTS---EEEE---- CS
               UPF0020 108 sqa.daakLr..lkegevdvivtnpPY 131
                            +     kL    + +++d++++npP+
  REBASE::M.Tsp23208II 275 GDTiRTPKLVeaDRLKQYDLVIANPPF 301
                           543133344433223379999999998 PP



Or compare REBASE::M.Tsp23208II to CDD or PaperBLAST