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Align REBASE::M.TspPM5II to PF01170 (UPF0020)

REBASE::M.TspPM5II has 521 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    2.4e-12   33.1   0.0    8.6e-12   31.3   0.0    1.9  2  REBASE::M.TspPM5II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.TspPM5II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   8.6e-12   8.6e-12      18     134 ..     161     272 ..     157     281 .. 0.79
   2 ?   -2.8   0.0      0.23      0.23     147     173 ..     306     332 ..     304     337 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 8.6e-12
                         HHHHHHTT--TTS-EEETT-TTSHHHHHHH.HHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEE. CS
             UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaa.llganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie. 106
                         +a+v + + kpg+++ DP CG+G++l+ a   ++++  ++++r++  +lk+ea         l g ++  ++ + +  N+   g+gd  + 
  REBASE::M.TspPM5II 161 SAIVDVMQPKPGQRICDPACGTGGFLLAAHdYIVKHYSQQMNRDQRRFLKHEA---------LHGWEIVDAAARLCVMNLFLHGIGDDESe 242
                         799************************98724555556666777666666665.........89*********************986541 PP

                         EEE--.GGG--.STTS---EEEE------- CS
             UPF0020 107 fsqad.aakLr.lkegevdvivtnpPYGer 134
                          s    a +Lr ++ + +d+++tnpP+G++
  REBASE::M.TspPM5II 243 HSPIRvADSLRsHPGDYFDLVLTNPPFGRK 272
                         33333144577557779***********86 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.23
                         HHHHHHHHH-TT..-EEEEEESSHHHH CS
             UPF0020 147 eflrelkrvlrgggrlvlltsenkale 173
                         +fl+ +k+ l+ +g +++++++n  +e
  REBASE::M.TspPM5II 306 NFLQHVKSLLKAHGQAAIVVPDNVLFE 332
                         589999*************99998876 PP



Or compare REBASE::M.TspPM5II to CDD or PaperBLAST