REBASE::M.Van11008II has 496 amino acids
Query: UPF0020 [M=197] Accession: PF01170.22 Description: Putative RNA methylase family UPF0020 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-11 29.4 0.0 7e-11 28.3 0.0 1.6 1 REBASE::M.Van11008II Domain annotation for each sequence (and alignments): >> REBASE::M.Van11008II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.3 0.0 7e-11 7e-11 18 134 .. 172 279 .. 168 345 .. 0.71 Alignments for each domain: == domain 1 score: 28.3 bits; conditional E-value: 7e-11 UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106 + +v++ + k ge+++DP CG+G++l a +++ + + a ++ + ++ g+++++ + +N g++ ++ REBASE::M.Van11008II 172 RFIVNRLDPKLGEQIMDPACGTGGFLACAFDHVKENY-----------VTSAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEVPVQ 249 56899999******************55544433333...........1233333335556********99999******999999999 PP UPF0020 107 fsqadaakLr..lkegevdvivtnpPYGer 134 ++ + + + + +++++vi+tnpP+G REBASE::M.Van11008II 250 IKHGNTLNKPlsNWDSNINVIATNPPFGGT 279 999887665533666799**********64 PP
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