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Align REBASE::M.Van11008II to PF01170 (UPF0020)

REBASE::M.Van11008II has 496 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    4.6e-11   28.9   0.0      1e-10   27.8   0.0    1.6  1  REBASE::M.Van11008II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Van11008II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0     1e-10     1e-10      18     134 ..     172     279 ..     168     345 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1e-10
                           HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEE CS
               UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106
                           + +v++ + k ge+++DP CG+G++l  a   +++ +            + a  ++  + ++ g+++++     + +N    g++  ++
  REBASE::M.Van11008II 172 RFIVNRLDPKLGEQIMDPACGTGGFLACAFDHVKENY-----------VTSAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEVPVQ 249
                           56899999*****************955544333333...........1233333335556********99999*****9999999999 PP

                           EEE--GGG--..STTS---EEEE------- CS
               UPF0020 107 fsqadaakLr..lkegevdvivtnpPYGer 134
                           ++  +  + +  + +++++vi+tnpP+G  
  REBASE::M.Van11008II 250 IKHGNTLNKPlsNWDSNINVIATNPPFGGT 279
                           999887665533666799**********64 PP



Or compare REBASE::M.Van11008II to CDD or PaperBLAST