REBASE::M.Van425I has 519 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.3e-13 34.4 0.0 2.1e-12 33.2 0.0 1.5 1 REBASE::M.Van425I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Van425I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.2 0.0 2.1e-12 2.1e-12 18 135 .. 163 298 .. 159 306 .. 0.77
Alignments for each domain:
== domain 1 score: 33.2 bits; conditional E-value: 2.1e-12
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye...........lkaeaeeear...aelklygsDldrrvvqgareN 95
a++ + ++ +++lDP CG+G++ + a+ ++ + + + +++ +k+++++++ ++ ++g ++ ++ + + N
REBASE::M.Van425I 163 DAMLACVRPEPKKTILDPACGTGGFFLSACDWITYGDTQWIEKGMSHwnpakdnsstiAKSKLNKDQVkflRDNTFFGNEIVPSTRRMCLMN 254
5999999***********************9888888666666666699999**999966666666664547777***************99 PP
UPF0020 96 aekagvg...dliefsqada..akLrlkegevdvivtnpPYGerl 135
+ ++g ++ +++ ada + L+ e++vd +++npP+G++
REBASE::M.Van425I 255 LFLHNIGsidGEPKVERADAllTPLK-GEDKVDYVLANPPFGKKS 298
86655541114455555555116666.899************975 PP
Or compare REBASE::M.Van425I to CDD or PaperBLAST