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Align REBASE::M.Vha43516I to PF01170 (UPF0020)

REBASE::M.Vha43516I has 512 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    9.5e-13   34.4   0.0    1.8e-12   33.5   0.0    1.4  1  REBASE::M.Vha43516I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Vha43516I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.8e-12   1.8e-12      19     140 ..     171     304 ..     166     319 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.8e-12
                          HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS...........HHHHHHHHHHHH--EEEEES-HHHHHHHHHHHH CS
              UPF0020  19 alvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle...........lkaeaeeearaelklygsDldrrvvqgareNae 97 
                           +v++ +++p++++ DP CG+ ++l  + +   ++ + + +e +++           l++e + ++++++ ++g+D+d+ +++ +  N  
  REBASE::M.Vha43516I 171 MMVEMLDVQPTDVICDPACGTAGFL-SRTMEYLTRTH-TSKESIYQdedgnpvytgdLLHEYQDHINNNM-FWGFDFDSTMLRVSAMNML 257
                          59*******************9998.45555555553.5566666688999**99988888888887654.9*****************9 PP

                          HTT-GG.GEEEEE--GGG--...STTS---EEEE----------HHH CS
              UPF0020  98 kagvgd.liefsqadaakLr...lkegevdvivtnpPYGerlgskka 140
                            gv+   i++++  ++++    ++++ +d i++npP+  +l+++  
  REBASE::M.Vha43516I 258 LHGVSSaNITYQDSLNKNFVekdQEHDFFDKILANPPFKGSLDEQSV 304
                          9999752799**9999999854433446899*******999998765 PP



Or compare REBASE::M.Vha43516I to CDD or PaperBLAST