REBASE::M.Vha43516I has 512 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-12 34.3 0.0 1.9e-12 33.4 0.0 1.4 1 REBASE::M.Vha43516I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Vha43516I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.4 0.0 1.9e-12 1.9e-12 19 140 .. 171 304 .. 166 319 .. 0.81
Alignments for each domain:
== domain 1 score: 33.4 bits; conditional E-value: 1.9e-12
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye...........lkaeaeeearaelklygsDldrrvvqgareNae 97
+v++ ++++++++ DP CG+ ++l + + ++ + + +e +y+ l++e + ++++++ ++g+D+d+ +++ + N
REBASE::M.Vha43516I 171 MMVEMLDVQPTDVICDPACGTAGFL-SRTMEYLTRTH-TSKESIYQdedgnpvytgdLLHEYQDHINNNM-FWGFDFDSTMLRVSAMNML 257
59*******************9998.45555555553.5666666688999**99988888888877654.9*****************9 PP
UPF0020 98 kagvgd.liefsqadaakLr...lkegevdvivtnpPYGerlgskka 140
gv+ i++++ ++++ ++++ +d i++npP+ +l+++
REBASE::M.Vha43516I 258 LHGVSSaNITYQDSLNKNFVekdQEHDFFDKILANPPFKGSLDEQSV 304
9999752799**9999999854433446899*******999998765 PP
Or compare REBASE::M.Vha43516I to CDD or PaperBLAST