PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.VmeT6III to PF01170 (UPF0020)

REBASE::M.VmeT6III has 525 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    4.8e-13   35.4   0.0    1.1e-12   34.1   0.0    1.6  1  REBASE::M.VmeT6III  


Domain annotation for each sequence (and alignments):
>> REBASE::M.VmeT6III  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.1e-12   1.1e-12      17     138 ..     168     318 ..     164     372 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1.1e-12
                         HHHHHHHTT--TTS-EEETT-TTSHHH...HHHHHHHTT--TTTT----SS.......................HHHHHHHHHH.HH--EE CS
             UPF0020  17 AaalvrlagwkpgepllDPmCGsGtil...IEaallganiapgllrefvle.......................lkaeaeeear.aelkly 80 
                          +a++++ +++++++  DP CG+G++l    E  l + + + g  +e+++                        l +++    + +e  + 
  REBASE::M.VmeT6III 168 IRAMIEMLDVEETHRVCDPACGTGGFLsstYEYLLEKYSSPEGVEKEQAFDtegkpvldvhgnpvfnylyagdlLSNRW----HiDEDMFH 254
                         58************************85445888888888888888888889*************99876444333333....3445569* PP

                         EEES-HHHHHHHHHHHHHTT-GGG.EEEEE--GGG--.....STTS---EEEE----------H CS
             UPF0020  81 gsDldrrvvqgareNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgsk 138
                         g+D+d+ +++ a  N+   gv++  i++++   +++      ++++ +d+i++npP+  +l+++
  REBASE::M.VmeT6III 255 GFDFDSTMLRVAAMNLVMHGVKQPdIHYQDTLSQSFIerfpdEAKNGFDIILANPPFKGSLDEE 318
                         ********************998549999888877655666877889**********9999886 PP



Or compare REBASE::M.VmeT6III to CDD or PaperBLAST