REBASE::M.Vpa17802I has 635 amino acids
Query: UPF0020 [M=197] Accession: PF01170.22 Description: Putative RNA methylase family UPF0020 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-12 31.2 0.2 1.3e-10 27.4 0.0 2.3 2 REBASE::M.Vpa17802I Domain annotation for each sequence (and alignments): >> REBASE::M.Vpa17802I # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.4 0.0 1.3e-10 1.3e-10 18 137 .. 225 343 .. 221 359 .. 0.77 2 ? 0.7 0.5 0.02 0.02 45 118 .. 534 582 .. 505 597 .. 0.57 Alignments for each domain: == domain 1 score: 27.4 bits; conditional E-value: 1.3e-10 UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107 +a+v + + g++ +DP CG+G++l a+ ++ia +l ++ ++ +++++ + ++g ++ + v+ a N+ g+++ + REBASE::M.Vpa17802I 225 RAMVHTVKPELGQTVYDPCCGTGGFL---AIAYEHIARQLGQSPASTDLDTLKYD-----TFFGREKENLVIPIALANLVLHGIDQPNLW 306 79***********************9...89999999877766665555555443.....4*********************99987766 PP UPF0020 108 ......sqadaakLr.lkegevdvivtnpPYGerlgs 137 + a a L ++ +++dvi+tnpP+G + g+ REBASE::M.Vpa17802I 307 hgnsltRRATYAGLFeQAPKQFDVILTNPPFGGKEGK 343 111111344445555555569**********976655 PP == domain 2 score: 0.7 bits; conditional E-value: 0.02 UPF0020 45 EaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekag...vgdliefsqadaakLrlk 118 Eaa ++ +Dl++++ q +++aeka v+++i+++q+ a++L+ k REBASE::M.Vpa17802I 534 EAAAIK----------------------------AEVIDLKEQHKQLKKDKAEKAAldaVNEQIAQKQKAAKALETK 582 333333............................4445566666666666666654111345555555555555533 PP
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