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Align REBASE::M.Vpa17802I to PF01170 (UPF0020)

REBASE::M.Vpa17802I has 635 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    8.9e-12   31.2   0.3    1.3e-10   27.4   0.0    2.3  2  REBASE::M.Vpa17802I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Vpa17802I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.3e-10   1.3e-10      18     137 ..     225     343 ..     221     359 .. 0.77
   2 ?    0.7   0.6     0.019     0.019      45     118 ..     534     582 ..     504     597 .. 0.58

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.3e-10
                          HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEE CS
              UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
                          +a+v   + + g++ +DP CG+G++l   a+  ++ia +l ++ ++  +++++ +      ++g ++++ v+  a  N+   g+++   +
  REBASE::M.Vpa17802I 225 RAMVHTVKPELGQTVYDPCCGTGGFL---AIAYEHIARQLGQSPASTDLDTLKYD-----TFFGREKENLVIPIALANLVLHGIDQPNLW 306
                          79***********************9...89999999877766665555555443.....3*********************99987766 PP

                          ......EE--GGG--.STTS---EEEE---------- CS
              UPF0020 108 ......sqadaakLr.lkegevdvivtnpPYGerlgs 137
                                + a  a L  ++ +++dvi+tnpP+G + g+
  REBASE::M.Vpa17802I 307 hgnsltRRATYAGLFeQAPKQFDVILTNPPFGGKEGK 343
                          111111344445554555569***********77655 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.019
                          HHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT...-GGGEEEEE--GGG--ST CS
              UPF0020  45 EaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekag...vgdliefsqadaakLrlk 118
                          Eaa ++                               +Dl++++ q  +++aeka    v+++i+++q+ a++L+ k
  REBASE::M.Vpa17802I 534 EAAAIK----------------------------AEVIDLKEQHKQLKKDKAEKAAldaVNEQIAQKQKAAKALETK 582
                          333333............................4445666666666666666654111345555556555555533 PP



Or compare REBASE::M.Vpa17802I to CDD or PaperBLAST