REBASE::M.Vsp61001III has 495 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.1e-11 27.9 0.0 2.2e-10 26.7 0.0 1.6 1 REBASE::M.Vsp61001III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Vsp61001III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.7 0.0 2.2e-10 2.2e-10 18 134 .. 172 279 .. 168 344 .. 0.75
Alignments for each domain:
== domain 1 score: 26.7 bits; conditional E-value: 2.2e-10
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdl 104
+ +v++ + k ge+++DP CG+G++l a + ++ + + ++ + + ++ g+++++ + +N g++
REBASE::M.Vsp61001III 172 RFIVNRLDPKLGEQIMDPACGTGGFL---ACSFDHVKENYV---------TSTADHQtLQKQIHGVEKKQLPHLLCITNMMLHGIEVP 247
56899999*****************9...555666662222.........233333324445********99999*****99999999 PP
UPF0020 105 iefsqadaakLr..lkegevdvivtnpPYGer 134
++++ + + + + +++++vi+tnpP+G
REBASE::M.Vsp61001III 248 VQIKHGNTLNKPlsNWDSNINVIATNPPFGGT 279
99999887665533666799**********54 PP
Or compare REBASE::M.Vsp61001III to CDD or PaperBLAST