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Align REBASE::M.Vsp61001III to PF01170 (UPF0020)

REBASE::M.Vsp61001III has 495 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    1.3e-10   27.4   0.0    3.1e-10   26.2   0.0    1.7  1  REBASE::M.Vsp61001III  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Vsp61001III  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   3.1e-10   3.1e-10      18     133 ..     172     278 ..     168     344 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.1e-10
                            HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH.HH--EEEEES-HHHHHHHHHHHHHTT-GGG CS
                UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdl 104
                            + +v++ + k ge+++DP CG+G++l   a    ++    +         +  ++ +  + ++ g+++++     + +N    g++  
  REBASE::M.Vsp61001III 172 RFIVNRLDPKLGEQIMDPACGTGGFL---ACSFDHVKENYV---------TSTADHQtLQKQIHGVEKKQLPHLLCITNMMLHGIEVP 247
                            56899999*****************9...555666662222.........233333314445********99999*****99999999 PP

                            EEEEE--GGG--..STTS---EEEE------ CS
                UPF0020 105 iefsqadaakLr..lkegevdvivtnpPYGe 133
                            ++++  +  + +  + +++++vi+tnpP+G 
  REBASE::M.Vsp61001III 248 VQIKHGNTLNKPlsNWDSNINVIATNPPFGG 278
                            99999887665533666799**********5 PP



Or compare REBASE::M.Vsp61001III to CDD or PaperBLAST